PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096299.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 200aa    MW: 23433.1 Da    PI: 9.8757
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.51.6e-31121112102
                     HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
    HSF_DNA-bind   2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                     Fl+k+y++le+e          k+++sw+ +gn fvv+ + +f++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++         weF+h++F++
  XP_011096299.1  12 FLSKTYDLLEEEreaervggGKKKIVSWNLEGNGFVVWCPADFSDLMLPRYFKHNNFSSFIRQLNTYGFKKTASKR---------WEFQHEKFRR 97 
                     9*********888888888899**************************************************9988.........********** PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  89 gkkellekikrkks 102
                     g ++ll +++rkk 
  XP_011096299.1  98 GCRHLLAEMRRKKC 111
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-336103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-398109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-259109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-2812109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSCRKSKCPA PFLSKTYDLL EEEREAERVG GGKKKIVSWN LEGNGFVVWC PADFSDLMLP  60
RYFKHNNFSS FIRQLNTYGF KKTASKRWEF QHEKFRRGCR HLLAEMRRKK CQPSAFPSYL  120
KPSAHHPPTQ DNKSIAATAT ASEVLFMELM EENKKLRRER LELELQIAHF KTMEMKLLEC  180
LSHPTPTHHY PPSIPINYLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A8e-1681097110Heat shock factor protein 2
5hdk_B8e-1681097110Heat shock factor protein 2
5hdk_C8e-1681097110Heat shock factor protein 2
5hdk_D8e-1681097110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096299.11e-149heat stress transcription factor B-2a-like
TrEMBLA0A2J6MET98e-79A0A2J6MET9_LACSA; Uncharacterized protein
STRINGSolyc02g078340.2.11e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-35heat shock factor 4