PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096328.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 131aa MW: 15013.6 Da PI: 8.3889

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.9	1.2e-42	52	127	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C+ad+++a+ yhrrhkvCe+h+ka+vv+++gl+qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++ XP_011096328.1 52 CQVEDCTADMADARPYHRRHKVCEFHAKAAVVFLAGLQQRFCQQCSRFHELQEFDEAKRSCRRRLAGHNERRRKSS 127 **************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	8.1E-57	1	131	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	2.5E-34	44	113	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.137	49	126	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-38	51	129	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-32	52	125	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
METSKEAGKR IAELDEEGEE DEDAGEDNKK KRALSPSKRR VSGAGGSTQR SCQVEDCTAD 60 MADARPYHRR HKVCEFHAKA AVVFLAGLQQ RFCQQCSRFH ELQEFDEAKR SCRRRLAGHN 120 ERRRKSSYDS H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-42	44	125	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096328.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096328.1	2e-91	squamosa promoter-binding protein 1
Swissprot	Q38741	1e-65	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A075FJ68	2e-67	A0A075FJ68_SALMI; SQUAMOSA promoter binding protein-like 15 (Fragment)
STRING	Migut.M01124.1.p	5e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-45	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]