PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096367.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 160aa    MW: 18475.7 Da    PI: 6.7826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-191570257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    ++R +++++q++ Le+ F+ n++++ +++ +LA +lg++ rqV +W+qN+Ra+ek+
  XP_011096367.1 15 KHRKRLSQDQVRLLETNFNFNNKLDPDRKSRLALELGIPPRQVAIWYQNKRAREKN 70
                    89****************************************************95 PP
2HD-ZIP_I/II105.25e-3416107293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +++rls++qv+lLE++F+ ++kL+p+rK++la eLg+ prqva+W+qn+RAR k++ lE d+++L+++++++++en+rLe eve+L++el++
  XP_011096367.1  16 HRKRLSQDQVRLLETNFNFNNKLDPDRKSRLALELGIPPRQVAIWYQNKRAREKNQSLEADHKTLQQQLENVVAENARLEGEVERLKAELNK 107
                     689*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-18772IPR009057Homeodomain-like
PROSITE profilePS5007116.6981171IPR001356Homeobox domain
SMARTSM003891.0E-161375IPR001356Homeobox domain
PfamPF000466.1E-161570IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-181571IPR009057Homeodomain-like
CDDcd000862.43E-141572No hitNo description
PRINTSPR000317.1E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000317.1E-55167IPR000047Helix-turn-helix motif
Gene3DG3DSA:1.20.5.1707.5E-472114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDEFRCPQTR KQQSKHRKRL SQDQVRLLET NFNFNNKLDP DRKSRLALEL GIPPRQVAIW  60
YQNKRAREKN QSLEADHKTL QQQLENVVAE NARLEGEVER LKAELNKIHD VLNAFNSSTC  120
CEEVGSSSLS SEQNLEKELY AALIGVRDPF VAPDGYDFFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096367.11e-116homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2G9GLF62e-71A0A2G9GLF6_9LAMI; Uncharacterized protein
STRINGXP_009800499.11e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-28homeobox protein 52