PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096522.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 237aa    MW: 26541.7 Da    PI: 5.3569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000241852211354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R+r ++    Lr ++P a      ++s +++L +Av+Y+ksL
  XP_011096522.1 185 RQRTRKMVKVLRGIVPGA-----SRMSTVAVLDEAVRYLKSL 221
                     555666667799999998.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.493172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.01181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-5183226No hitNo description
SuperFamilySSF474593.93E-7183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-4184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MHSHQPHFSG KPMQPLADQF DYYMQNAPMS SLLNGGIMPP GIKPLMPFHS FDIQPSDACP  60
RNFVIFDQTT NRSQIMYHPG INSKFFYPGL GVDAVCQDNI NQKDANDEIK LTSPLEEDSD  120
DIDALLSTEN EENEDFDDEE VSTARTGAVY KCDSPDSCSN YESPSEKSGS LFRKFSGSCC  180
NDKKRQRTRK MVKVLRGIVP GASRMSTVAV LDEAVRYLKS LRVEAQKLGA RNFKDHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096522.11e-179transcription factor bHLH144
RefseqXP_011096525.11e-179transcription factor bHLH144
RefseqXP_011096526.11e-179transcription factor bHLH144
RefseqXP_020554104.11e-179transcription factor bHLH144
TrEMBLA0A2G9I1271e-110A0A2G9I127_9LAMI; Uncharacterized protein
STRINGMigut.H01376.1.p9e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-31bHLH family protein