PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096636.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 902aa    MW: 99078.8 Da    PI: 6.4422
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011096636.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011096636.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp121.65.7e-40254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_011096636.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-49112257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-21127228No hitNo description
PfamPF023622.1E-22128229IPR003340B3 DNA binding domain
SMARTSM010192.8E-24128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605128230IPR003340B3 DNA binding domain
PfamPF065077.9E-35254337IPR010525Auxin response factor
SuperFamilySSF542774.05E-7762842No hitNo description
PfamPF023093.0E-7765856IPR033389AUX/IAA domain
PROSITE profilePS5174524.692767851IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MKLSSAGLNQ QSPEGDKDCL NSELWHACAG PLVSLPSIGS HVVYFPQGHS EQVAASTNKE  60
VDAQIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEV SFLPADLGAP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHNNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF ALRLKRPWPP GLPSFTGIKT TDMGLNSPLM WLRGDVVDRG MQSLNQGMGA  420
TPWMQPGLDS SVLGMQNDIY QAMAAAAVQD MRVVDPSKQM LSSIMQFQQP QAISGRPASF  480
IQPQILQQSQ PSAPFLQNLP GSQSQASPQS HANLLQQQLV HQNSFNNVQI QHQHQQSTPM  540
QHVIGSQHVS TVEPILSQFS ANSQAQSESM QSVSSMSQNF SDSNVKPVAG NITSPLHSLL  600
GSVTQDETSN HLNMPRSSNL LSSNGWPTKR VALDPLISGG ISQAITPQID QLGPSNTNVT  660
PNPVSLPPFP GRECLIEQEA SNDPQNHFLF GVNIDSSPLL MQNGIPNLKA VGSDSDNATV  720
VFASSSFMSS SGADYSLNPT VTSSSCLDES GFLLSSDNVG HVNPPNRTFV KVYKSGSFGR  780
SLDISKFSSY HELRSELAQM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS  840
VWCIKILSPQ EVQEMGKRGL ELLNSVPIQK LPLPNGTCDG FANRQEARNM SAGIPSVGTL  900
DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631735848388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096636.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9GUS90.0A0A2G9GUS9_9LAMI; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]