PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096637.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 901aa    MW: 98922.6 Da    PI: 6.3734
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-24129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011096637.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 219
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011096637.1 220 KNQLLLGIRRA 230
                     9999****997 PP
2Auxin_resp110.61.6e-36255336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnP+  +seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_011096637.1 255 AAHAAATNSRFTIFYNPS--PSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79***************7..7**************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-49113258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-42122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-21128229No hitNo description
PROSITE profilePS5086312.605129231IPR003340B3 DNA binding domain
PfamPF023622.1E-22129230IPR003340B3 DNA binding domain
SMARTSM010192.8E-24129231IPR003340B3 DNA binding domain
PfamPF065077.1E-32255336IPR010525Auxin response factor
SuperFamilySSF542774.05E-7761841No hitNo description
PfamPF023093.0E-7764855IPR033389AUX/IAA domain
PROSITE profilePS5174524.692766850IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MKLSSAGLNQ QSPEAGDKDC LNSELWHACA GPLVSLPSIG SHVVYFPQGH SEQVAASTNK  60
EVDAQIPNYP SLPPQLICQL HNVTMHADIE TDEVYAQMTL QPLSPQEQKE VSFLPADLGA  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDLHNNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PSPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFA LRLKRPWPPG LPSFTGIKTT DMGLNSPLMW LRGDVVDRGM QSLNQGMGAT  420
PWMQPGLDSS VLGMQNDIYQ AMAAAAVQDM RVVDPSKQML SSIMQFQQPQ AISGRPASFI  480
QPQILQQSQP SAPFLQNLPG SQSQASPQSH ANLLQQQLVH QNSFNNVQIQ HQHQQSTPMQ  540
HVIGSQHVST VEPILSQFSA NSQAQSESMQ SVSSMSQNFS DSNVKPVAGN ITSPLHSLLG  600
SVTQDETSNH LNMPRSSNLL SSNGWPTKRV ALDPLISGGI SQAITPQIDQ LGPSNTNVTP  660
NPVSLPPFPG RECLIEQEAS NDPQNHFLFG VNIDSSPLLM QNGIPNLKAV GSDSDNATVV  720
FASSSFMSSS GADYSLNPTV TSSSCLDESG FLLSSDNVGH VNPPNRTFVK VYKSGSFGRS  780
LDISKFSSYH ELRSELAQMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVNSV  840
WCIKILSPQE VQEMGKRGLE LLNSVPIQKL PLPNGTCDGF ANRQEARNMS AGIPSVGTLD  900
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591835748388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096637.10.0auxin response factor 6 isoform X3
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9GUS90.0A0A2G9GUS9_9LAMI; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]