PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096731.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LSD

Protein Properties

Length: 176aa MW: 18251.2 Da PI: 8.3341

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.1	2.8e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L YPrGA++V+Ca+C+ V XP_011096731.1 7 CGGCRTVLLYPRGASNVCCAICNVV 31 ***********************98 PP
2	zf-LSD1	38.4	2e-12	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA+sVRC++C+tV XP_011096731.1 46 CGGCRTLLMHAQGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49	1e-15	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ XP_011096731.1 87 CGNCHTMLMYPAGAPSVKCAICHFI 111 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.2E-13	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-11	7	31	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	1.67E-5	21	109	IPR011031	Multihaem cytochrome
Gene3D	G3DSA:3.90.10.10	1.3E-4	39	111	No hit	No description
TIGRFAMs	TIGR01053	2.1E-15	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.0E-11	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.5E-13	84	113	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.6E-14	87	111	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MQNQLVCGGC RTVLLYPRGA SNVCCAICNV VTPVPPAGME MAQLICGGCR TLLMHAQGAT 60 SVRCSCCHTV NLVPAAAPPN NVAHVNCGNC HTMLMYPAGA PSVKCAICHF ITNVNTGDRR 120 VPIPLQRPGG FSTSASTPPT STVTARSQSQ TVVVQNPMTL DESGKLVSNV VVGVTT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096731.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096731.1	1e-123	protein LSD1
Swissprot	Q6ASS2	3e-66	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A4D9AS33	1e-100	A0A4D9AS33_SALSN; Uncharacterized protein
STRING	XP_009783613.1	9e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	5e-55	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]