PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096755.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 162aa MW: 17976.3 Da PI: 8.3669

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.3	3.2e-44	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C++dC+++pyfpa++p+kfa vh++FGasnv k+l++lpe +r da++s+vyeA+ar+rdPvyG+vg+i+ lqqq++ l+a+la XP_011096755.1 13 PCAACRLLRRRCTEDCMFSPYFPADEPHKFASVHRVFGASNVNKMLQELPEYQRGDAVRSMVYEANARMRDPVYGCVGTISYLQQQIDALRAQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_011096755.1 108 LAQAE 112 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.681	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MKEVGRKQGA PSPCAACRLL RRRCTEDCMF SPYFPADEPH KFASVHRVFG ASNVNKMLQE 60 LPEYQRGDAV RSMVYEANAR MRDPVYGCVG TISYLQQQID ALRAQLALAQ AEVVHLRAAA 120 STPQNTSPSG SGSPTSYTFK PSFDMDTVVQ QSSFRESLWS CT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096755.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096755.1	1e-119	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	3e-65	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2G9G283	2e-84	A0A2G9G283_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400022286	1e-81	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-50	LOB domain-containing protein 4