PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096766.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 278aa MW: 32094.5 Da PI: 10.3224

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.1e-17	23	108	2	79
trihelix 2 WtkqevlaLiearr........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W qe+++Liea++ +++e+++rgk ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ +++ ++ XP_011096766.1 23 WNLQETMVLIEAKKmddqrrmkRVGESSERGKPAELRWKWVEDYCWKNGCLRSQNQCNDKWDNLMRDFKKVREYERRVAERGGEEK 108 ************666655555555555689******************************************9866555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	15	87	IPR017877	Myb-like domain
Pfam	PF13837	5.5E-11	22	114	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDLTMANQGG NNNMLRDYRK GNWNLQETMV LIEAKKMDDQ RRMKRVGESS ERGKPAELRW 60 KWVEDYCWKN GCLRSQNQCN DKWDNLMRDF KKVREYERRV AERGGEEKSY WRIDKNERKD 120 NNLPSNMLPQ IYEALVEVVE RKGQREAAAS GGAGSSRANV VPATSIVEKS AASHVLGHLS 180 MPPPVQQYPI IQAPAMLLPL PPPAQAPAEP PTIPSSQPLP AVVRFGDERV LRLTGEEKKE 240 RVRWWGRGRN ERGSWYVRRS RVCNLKERFH HSRSNSVM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096766.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096766.1	0.0	trihelix transcription factor GT-4 isoform X3
TrEMBL	A0A2G9HYY0	1e-103	A0A2G9HYY0_9LAMI; Transcription factor GT-2
STRING	Migut.M01958.1.p	5e-80	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-57	Trihelix family protein