PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097082.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 241aa    MW: 27808.8 Da    PI: 9.019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll+++++ +G g W++++ +  ++R++k+c++rw++yl
   XP_011097082.1 11 KGTWTPEEDALLKKCIENYGEGKWHLVPIRARLNRCRKSCRLRWLNYL 58
                     799*******************************************97 PP
2Myb_DNA-binding51.32.7e-1664108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +gr+T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++
   XP_011097082.1  64 KGRFTKDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTGNDVKNFWNSH 108
                      79********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.41662IPR017930Myb domain
SuperFamilySSF466894.49E-289105IPR009057Homeodomain-like
SMARTSM007174.8E-141060IPR001005SANT/Myb domain
PfamPF002492.3E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-221265IPR009057Homeodomain-like
CDDcd001675.67E-101358No hitNo description
PROSITE profilePS5129418.63563113IPR017930Myb domain
SMARTSM007172.8E-1563111IPR001005SANT/Myb domain
PfamPF002491.3E-1464108IPR001005SANT/Myb domain
CDDcd001672.15E-1066109No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2366111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKNNMSDGVR KGTWTPEEDA LLKKCIENYG EGKWHLVPIR ARLNRCRKSC RLRWLNYLKP  60
DINKGRFTKD EVDLIIRLHK LLGNRWSLIA GRLPGRTGND VKNFWNSHIN KTGRAEVEKT  120
ITSTNILRPR PRIPSNLQVP WPRETRKTVP QSNNLVPTTD GAPENKQHPS TKVDECIRWW  180
SNLLEMTNME TVVVDDIEKQ TGETSTVLHD LAVPSPKVMD ESGDMNVDVD LGELMRFCDE  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22111117106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097082.11e-178transcription factor MYB114-like
SwissprotQ9FNV99e-57MY113_ARATH; Transcription factor MYB113
TrEMBLW8EB735e-77W8EB73_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor
STRINGMigut.L00458.1.p2e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]