PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097193.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 270aa MW: 29176.7 Da PI: 6.7133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.9	4.1e-20	20	94	25	99
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e++l ++ XP_011097193.1 20 SQANATVFLAKFYGRAGLMNLINAGPSHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQNAVEAVLKGA 94 688999**************************************************************9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.759	1	96	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-14	20	89	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVVEFCGRGA GGTATAGLDS QANATVFLAK FYGRAGLMNL INAGPSHLRP AIFRSLLYEA 60 CGRIVNPIYG SVGLMWSGSW QLCQNAVEAV LKGAPITQIA TDAAAAKNGP PLKAYDIRHV 120 NKEENLNDLH RVRNRCRFKR SAPKSKRSRV RVESAEETSH DEVNRTSPSH ESSLSHQSET 180 TEPVVERISG QSESLGSAET AEAEADHGVG VEPNFNTDHR LANDDEIELD LTLGLEPMKR 240 SPKPKRRQAG DSADNGGLCK MELALECPAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	1e-121	LOB domain-containing protein 41
Swissprot	Q9M886	1e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HGD5	1e-104	A0A2G9HGD5_9LAMI; Uncharacterized protein
STRING	Migut.L00314.1.p	1e-104	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-68	LOB domain-containing protein 41