PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097231.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 214aa MW: 23301.6 Da PI: 6.4971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96	4e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++++++++++q+ XP_011097231.1 2 SCNGCRVLRKGCSESCILRPCLqwiesVEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6*******************9888777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_011097231.1 97 AVETVLR 103 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.495	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESVE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGSVKSI PELLGGASEP 120 DDASECTDMF RLQDPGLSSE PKVQKRRRSP DEPAKVMQLA DLDLSLTPGF QDKRSSTLPE 180 KRRPVSPSMY SEESVTTTCG DQPATEIKLL NLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	PKVQKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097231.1	1e-157	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-82	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SN23	1e-82	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2G9HZ72	1e-136	A0A2G9HZ72_9LAMI; Uncharacterized protein
STRING	XP_009626676.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-85	LOB domain-containing protein 38

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]