PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097276.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 255aa    MW: 29218.2 Da    PI: 8.9869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003397119223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H +  H
  XP_011097276.1  97 SCSVCSRVYPTSRLLSIHVSEaH 119
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035556994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003555.496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003552.3134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVMDVEETGT GLKFPYWNPL RRRFAPDAPF FAAGSIEREL LAKQVALDLT EEEKQQIREG  60
VEDWGSSEVF CQIVGCGAYL KSLEDFEDHY NARHMASCSV CSRVYPTSRL LSIHVSEAHD  120
SFFQAKVARG YAMYECLVEG CDAKLKSYKS RHQHLVDKHK FPPSFEFFKK AKPSKRQRQK  180
VLRKQALHKT ENASTEMQVE QENIDNLVSA VSRLSTSDSP SSISFGRRHT RGLAFVPRAI  240
QKERRPDPSP EQMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097276.10.0zinc finger protein 511
TrEMBLA0A2G9HTE41e-144A0A2G9HTE4_9LAMI; Alpha-SNAP protein
STRINGMigut.K01467.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-97zinc ion binding;nucleic acid binding;zinc ion binding