PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097470.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 484aa    MW: 53275.5 Da    PI: 8.2043
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14201260155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_011097470.1 201 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 260
                     57*******************666664478446**********99*************98 PP
2AP249.97.9e-16303354155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_011097470.1 303 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 354
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-11201260IPR001471AP2/ERF domain
CDDcd000181.51E-22201270No hitNo description
SuperFamilySSF541712.68E-17201270IPR016177DNA-binding domain
SMARTSM003802.8E-28202274IPR001471AP2/ERF domain
PROSITE profilePS5103219.137202268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-16202269IPR001471AP2/ERF domain
PRINTSPR003672.0E-6203214IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18303364IPR016177DNA-binding domain
PfamPF008474.1E-10303354IPR001471AP2/ERF domain
CDDcd000181.03E-11303364No hitNo description
PROSITE profilePS5103219.151304362IPR001471AP2/ERF domain
SMARTSM003807.7E-32304368IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18304363IPR001471AP2/ERF domain
PRINTSPR003672.0E-6344364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MFPFVLLSKT SLKKVGKDKK LHPCIPIFRY FKNTVYMCIW WATQKPQAMY GEAENHQVYM  60
QPPPKLEDFF AGGDSTETQD SSLTHIYDHQ TAGGGAAFFG NGEHQDLKTF TGFQAFSANS  120
GSEVNDSAFG GQTQSPVESG SELVAYSQCP ITASTTSNAL SLGVNNSSTA LCAENNNNTA  180
IVSADSESCK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG  240
YDKEDKAARA YDLAALKYWG PTATTNFPIS NYTKELEEMK HVTKQEFIAS LRRKSSGFSR  300
GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGVNAVTN  360
FEMSRYDVEA IAKSPLPIGG TAKRLKLSLE AEEKLPLSTA LQTPCSSNSS SSISFSAIQP  420
ASTIPCGVPY DTTAPFYHHN LFHHLNSGNL AASIDNSGPV SSMVTSVNLM PSPPEFFIWP  480
HQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097470.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU21e-149AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN60.0A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGXP_009783619.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-150AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]