PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097673.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 719aa    MW: 77094.7 Da    PI: 6.4454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31296353260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+ +g Hnh+k
  XP_011097673.1 296 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCAVKKKVERSH-EGHITEIIHKGAHNHPK 353
                     8****************************************.***************85 PP
2WRKY104.27.2e-33508566159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  XP_011097673.1 508 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 566
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26294354IPR003657WRKY domain
SMARTSM007741.2E-33295353IPR003657WRKY domain
SuperFamilySSF1182903.66E-24295354IPR003657WRKY domain
PfamPF031064.9E-23296352IPR003657WRKY domain
PROSITE profilePS5081122.481296354IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37493568IPR003657WRKY domain
SuperFamilySSF1182901.44E-28500568IPR003657WRKY domain
PROSITE profilePS5081138.733503568IPR003657WRKY domain
SMARTSM007746.6E-38508567IPR003657WRKY domain
PfamPF031064.9E-25509566IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRAFFTSMIA DDVVARAIAD SSVENEGRPP FLGPEGHSAS  60
GSADRNDLRQ ASTVGDEASN SNSLNGPKLS SRGGLMERIA ARAGFNAPRL NTESIKPADL  120
SKNQEVRSPY LTIPPGLSPA TLLESPVFLS NSLVLPSPTT GKFSFAPSGN NQNSMLMSDD  180
PDKGKENTSG DTSSFAFKPI PESGTIPYFS AANKSFPGVG VSARSDTSFL HRSAEPPEIQ  240
TFSKPHAEKK AGSNLSSEQT YHSVGFAENS PPLDEPHGDD GDQRSSGDNI GGSQAEDGYN  300
WRKYGQKQVK GSEYPRSYYK CTHPNCAVKK KVERSHEGHI TEIIHKGAHN HPKPPPNRRS  360
AFGSSSALSD IQLESEQPGT DANGDLVWST VQNGNAPGAP DWRQDNLEAT SSAELVQEYS  420
NGATFQAQNG AQYESGDAVD GSSPFSNDEE DDDQATHASV SLGYDVEGDE SESKRRRIET  480
YASEMSGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSAGCN  540
VRKHVERASH DLKSVITTYE GKHNHDVPAA RNSSHVNSGG SNTLPAQQAH GAAVSSQVHR  600
PEPSQIHGSA AQFERPGLGS FSLPGRPQLG LGPGFGFGMN QAGLASLGLA RLGCNQSKLP  660
VLPVHPYLGH QPRPMSGMGL MQPKAEPKLE PLTDSVLNSS HRSSVYQQLI SRLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37296569878Probable WRKY transcription factor 4
2lex_A9e-37296569878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473477KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097673.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2G9HU640.0A0A2G9HU64_9LAMI; Uncharacterized protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-174WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]