PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097907.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 371aa MW: 41962.5 Da PI: 6.021

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.6e-10	77	107	5	35
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 k +rr+++NReAAr+sR+RKka++++Le+ XP_011097907.1 77 KIQRRLAQNREAARKSRLRKKAYVQQLETSR 107 779************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	70	122	No hit	No description
SMART	SM00338	2.0E-5	73	137	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	75	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-6	77	122	No hit	No description
Pfam	PF00170	3.3E-7	77	110	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-27	163	237	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MTSPTTQFAP PSRIGIYEPL RQIGMWEDTF DDNISAGTGV CIIMETEAKL DDKTEYASDK 60 SLEHAEDSQA SKSISEKIQR RLAQNREAAR KSRLRKKAYV QQLETSRMKL AQLELELERA 120 RQQQGLLIAS ATANVGICGT INPGIAAFEM EYRHWIDEQE RKISELRNLL QSPIGDAELR 180 MVVENVLNHY CNLFRMKRDA ARADAFYLES GMWRTSVERF FLWIGGFRPS ELINVVMPQL 240 EPLTEEQIAS VNNLRHSCVQ AEDALSQGME KLQQTLAQSL TFLAAGAGNY SSQTAAALEK 300 LESLESFINQ ADHLREQTLH QMSRILTTRQ AAKGLLAFGE YFQRLRALSS LWSARSIENL 360 ANLQNDANSI R

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MTSPTTQFAP PSRIGIYEPL RQIGMWEDTF DDNISAGTGV CIIMETEAKL DDKTEYASDK  60
SLEHAEDSQA SKSISEKIQR RLAQNREAAR KSRLRKKAYV QQLETSRMKL AQLELELERA  120
RQQQGLLIAS ATANVGICGT INPGIAAFEM EYRHWIDEQE RKISELRNLL QSPIGDAELR  180
MVVENVLNHY CNLFRMKRDA ARADAFYLES GMWRTSVERF FLWIGGFRPS ELINVVMPQL  240
EPLTEEQIAS VNNLRHSCVQ AEDALSQGME KLQQTLAQSL TFLAAGAGNY SSQTAAALEK  300
LESLESFINQ ADHLREQTLH QMSRILTTRQ AAKGLLAFGE YFQRLRALSS LWSARSIENL  360
ANLQNDANSI R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097907.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097893.1	0.0	transcription factor TGA4 isoform X1
Refseq	XP_011097907.1	0.0	transcription factor TGA1 isoform X3
Swissprot	Q39237	1e-148	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2G9GQM5	0.0	A0A2G9GQM5_9LAMI; Uncharacterized protein
STRING	Migut.C00214.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-132	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]