PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098090.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WRKY

Protein Properties

Length: 315aa MW: 35547.3 Da PI: 7.9929

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.8e-34	186	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk++ers +dp++v++tYeg+Hnh+ XP_011098090.1 186 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCNVKKRIERSFQDPSTVITTYEGQHNHH 243 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.6E-35	170	245	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-29	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	180	245	IPR003657	WRKY domain
SMART	SM00774	2.4E-39	185	244	IPR003657	WRKY domain
Pfam	PF03106	6.7E-26	186	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSDEDKINYS HPYDRDHRNV MGSEGFPFSF PTDLNFDPFT YSHHQLQNPT GLDHHHSQMS 60 FTSFLHGDAE YNTLSAAFDL SCLSSEAVHA VNNSSSNKNL LEAAGTTNSA SENPPATPNS 120 SVSFSSSEAV IEEDSSSKNR RDLQRKGCED GDVMKSTKLK VKKKGEKKQR EPRVAFMTKS 180 DVDNLEDGYR WRKYGQKAVK NSPFPRSYYR CTSQKCNVKK RIERSFQDPS TVITTYEGQH 240 NHHSPATLRG SAAMLPPLPF PRLAQNFLFP NTCPQNHPNS SYYSHPNISP EQPQILPDQS 300 SLFPNMVSSF LHKHI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	178	246	10	78	Probable WRKY transcription factor 4
2lex_A	5e-26	178	246	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098090.1	0.0	probable WRKY transcription factor 71 isoform X2
Swissprot	Q8VWJ2	1e-51	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2G9H230	1e-99	A0A2G9H230_9LAMI; Uncharacterized protein
STRING	VIT_12s0028g00270.t01	7e-85	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]