PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098268.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HB-other
Protein Properties Length: 396aa    MW: 43628.1 Da    PI: 8.2958
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.5e-071474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f++ ++ e+e+  +   +  p +e  e LA++           +++ +qV +WFqNrR+  
  XP_011098268.1 14 FNPVEVGEMEAILQAhnCAVPAREILEALAQRFsssaeragkvEVSVKQVWNWFQNRRYAL 74
                    5666666777777633378888999999999999999999999***************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-10477IPR009057Homeodomain-like
SMARTSM003890.0018781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-81380IPR009057Homeodomain-like
CDDcd000862.11E-41375No hitNo description
PROSITE profilePS500718.9891377IPR001356Homeobox domain
PfamPF000466.7E-51474IPR001356Homeobox domain
SuperFamilySSF819952.17E-596166No hitNo description
PfamPF167195.2E-42174301IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPVEVG EMEAILQAHN CAVPAREILE ALAQRFSSSA ERAGKVEVSV  60
KQVWNWFQNR RYALRAKAAR ASVPGQVNMM PVPRDEQAVK SVPQVPQSQG PQPPVTQPQV  120
PQPQVPQPQI PQPQAPHPQA PQAQPAPSSS VRSIPQAPHP LPAPSGRNGS ENTQMEFEAK  180
SARDGAWYDV ASFLSHRSLE TGDPEALVRF AGFGPEEDEW VNIRRHVRQR SLPCESSECV  240
AVLPGDLILC FQEGKEQALY FDAHVLDAQR RRHDVRGCRC RFLVRYDHDQ SEEIVPLRKI  300
CRRPETDYRL QQLHAMSANM NPQKMGIDPQ VGNNVLKVDA TGGATQKQPK PEERIDTRSM  360
TNPAILTNVP AASESKLLTS KISDAGNSPA VGNSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A8e-481753054134SHH1 SAWADEE
4iur_B8e-481753054134SHH1 SAWADEE
4iut_A8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B8e-481753054134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098268.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ71e-134SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2G9HEQ71e-180A0A2G9HEQ7_9LAMI; Uncharacterized protein
STRINGMigut.M00766.1.p1e-179(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.16e-81sequence-specific DNA binding transcription factors;sequence-specific DNA binding