PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098359.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 251aa MW: 28716.7 Da PI: 7.7496

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.9	6.7e-12	156	241	1	98
EEEE-..-HH.HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdv.lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l+ sd+ lk++rl++pk++a e ++d++g++We+ ++y+ ++g+ yvl+ G +++ +++ + gD+v+F++++ +++ XP_011098359.1 156 FEKILSASDAdLKLARLIIPKRCA-E------------IQDTEGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQPGDTVTFYRVD-PGGKV 235 8899998887245699****99.2............4599*******544444448888.******************776.77767 PP EEEEE- CS B3 93 vvkvfr 98 v+++++ XP_011098359.1 236 VMGLRK 241 777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-4	151	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.41E-15	153	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.01E-16	154	241	No hit	No description
Pfam	PF02362	2.4E-8	156	241	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-9	156	243	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-10	181	245	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MASSSRLSCF HCQDSSSSPG HFRNGWRLRS GEYAQLCPRC ACVYEEGRFC ETFHSNDDGW 60 RDCESCGKLV HCGCIVSFNT HLLLDFGGII CMECSRFNFL LARNRCLSLE PEIRAKEPYQ 120 ERTGQALLEA QCWHRVTDLD LQQVSRSPKA TVTPLFEKIL SASDADLKLA RLIIPKRCAE 180 IQDTEGNEWE FHYRYWLNGG SRIYVLEGLR DYMVSKKWQP GDTVTFYRVD PGGKVVMGLR 240 KTSTGHQLPR I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	4e-32	135	248	3	130	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098359.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098359.1	0.0	B3 domain-containing protein Os07g0563300-like isoform X2
Swissprot	Q6Z3U3	5e-36	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2G9IAF1	1e-162	A0A2G9IAF1_9LAMI; Uncharacterized protein
STRING	Migut.H01903.1.p	1e-135	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	3e-34	high-level expression of sugar-inducible gene 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]