PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098360.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 249aa    MW: 28475.4 Da    PI: 7.7496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-10156239198
                     EEEE-..-HH.HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdv.lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k+l+ sd+ lk++rl++pk++a               ed++g++We+ ++y+ ++g+  yvl+ G +++  +++ + gD+v+F++++  +++ 
  XP_011098360.1 156 FEKILSASDAdLKLARLIIPKRCA---------------EDTEGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQPGDTVTFYRVD-PGGKV 233
                     677777777513447888888877...............5889**********544444448888.********************776.77767 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                     v+++++
  XP_011098360.1 234 VMGLRK 239
                     777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-13151243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14153242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-15154239No hitNo description
SMARTSM010198.1E-8156241IPR003340B3 DNA binding domain
PfamPF023622.4E-7179239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MASSSRLSCF HCQDSSSSPG HFRNGWRLRS GEYAQLCPRC ACVYEEGRFC ETFHSNDDGW  60
RDCESCGKLV HCGCIVSFNT HLLLDFGGII CMECSRFNFL LARNRCLSLE PEIRAKEPYQ  120
ERTGQALLEA QCWHRVTDLD LQQVSRSPKA TVTPLFEKIL SASDADLKLA RLIIPKRCAE  180
DTEGNEWEFH YRYWLNGGSR IYVLEGLRDY MVSKKWQPGD TVTFYRVDPG GKVVMGLRKT  240
STGHQLPRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-301352463130B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098360.10.0B3 domain-containing protein Os07g0563300-like isoform X3
SwissprotQ6Z3U32e-34Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G9IAF11e-161A0A2G9IAF1_9LAMI; Uncharacterized protein
STRINGMigut.H01903.1.p1e-134(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.12e-32high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]