PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098606.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 94aa    MW: 10517.8 Da    PI: 10.0252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.8e-0622621554
                    HHHHHHHHHHCTSCC.C...TTS-STCHH...HHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskKlsKae...iLekAveYIksL 54
                    +i +  ++L +llP+ +   + ++++Ka+   +L+++++YI++L
  XP_011098606.1 22 QIIDLVSKLHQLLPEiR---TTRRPNKASankVLQETCNYIRDL 62
                    56667799*******99...7777888755559*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.813762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-72082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-72384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSSGRRSRQ SSSGSSRISD DQIIDLVSKL HQLLPEIRTT RRPNKASANK VLQETCNYIR  60
DLHKEVDNLS ERLSQLLSTI DANSPEAAII RSLI
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098606.11e-60transcription factor PRE1
SwissprotQ9LJX13e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9I4F91e-46A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGXP_009758713.15e-46(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.11e-32bHLH family protein