PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098762.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 189aa    MW: 21935.9 Da    PI: 8.8438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-1757100146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
   XP_011098762.1  57 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 100
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-2237108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-113763IPR009057Homeodomain-like
PROSITE profilePS500904.3563851IPR017877Myb-like domain
PROSITE profilePS5129425.85952106IPR017930Myb domain
SMARTSM007171.8E-1556104IPR001005SANT/Myb domain
PfamPF002491.4E-1657100IPR001005SANT/Myb domain
CDDcd001676.15E-1361100No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2164102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTVMPLMRGV LVLLQKKKTL ISDEHLFICG YFDVGLKRTG KSCRLRWLNY LRPDVRRGNI  60
TPEEQLLIME LHAKWGNRWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQAE NFTGQPADHH  120
HHHTNDQAKP NDQASTSQLS SCGPADHAVE SYSPPSFNPN MEAFQGPFPT ESNDNFWSME  180
DLWSMQLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-183810640108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554639.12e-87myb-related protein 305
SwissprotP813913e-74MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A075BMS11e-85A0A075BMS1_SALMI; MYB-related transcription factor
STRINGMigut.H00102.1.p8e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-62myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]