PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098911.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 391aa MW: 44228.1 Da PI: 7.6853

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.3e-53	12	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_011098911.1 12 VPPGFRFHPTDEELLHFYLKKKVSFQKFDM-EVIREVDLNKIEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCI 105 69**************************.99**********964444222455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle XP_011098911.1 106 RN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 141 9.8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-59	11	162	IPR003441	NAC domain
PROSITE profile	PS51005	58.108	12	162	IPR003441	NAC domain
Pfam	PF02365	2.0E-27	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MAAGGSSGGG GVPPGFRFHP TDEELLHFYL KKKVSFQKFD MEVIREVDLN KIEPWELQER 60 CKIGSTPQNE WYFFSHKDRK YPTGSRTNRA TSAGFWKATG RDKCIRNSFK KIGMRKTLVF 120 YRGRAPHGQK TDWIMHEYRL EDSDNDPQPT EDGWVVCRVF KKKNLFKVGN NEGGSHINGG 180 MSTMNSCDQL NMSSVSASTS CTQSRSLVTQ RNNNASINQY LLHPHHADLN YSHIPVPPHH 240 QYPQLEAQNF ISTHNHIKPL MLTSTTSNYD HHLNLSALPS TTSTDYDHHQ SSAVITSMQV 300 KQFMSSNANT STRDDCESAS PAPAYQASCE PGLECNQSSQ PMVPRDDQNL NDWDRLVITT 360 SHHQDANPTS SLNQINPLSL RSEMDFWAYG K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MAAGGSSGGG GVPPGFRFHP TDEELLHFYL KKKVSFQKFD MEVIREVDLN KIEPWELQER  60
CKIGSTPQNE WYFFSHKDRK YPTGSRTNRA TSAGFWKATG RDKCIRNSFK KIGMRKTLVF  120
YRGRAPHGQK TDWIMHEYRL EDSDNDPQPT EDGWVVCRVF KKKNLFKVGN NEGGSHINGG  180
MSTMNSCDQL NMSSVSASTS CTQSRSLVTQ RNNNASINQY LLHPHHADLN YSHIPVPPHH  240
QYPQLEAQNF ISTHNHIKPL MLTSTTSNYD HHLNLSALPS TTSTDYDHHQ SSAVITSMQV  300
KQFMSSNANT STRDDCESAS PAPAYQASCE PGLECNQSSQ PMVPRDDQNL NDWDRLVITT  360
SHHQDANPTS SLNQINPLSL RSEMDFWAYG K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	12	164	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	12	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	12	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	12	164	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	12	164	20	170	NAC domain-containing protein 19
3swm_B	2e-51	12	164	20	170	NAC domain-containing protein 19
3swm_C	2e-51	12	164	20	170	NAC domain-containing protein 19
3swm_D	2e-51	12	164	20	170	NAC domain-containing protein 19
3swp_A	2e-51	12	164	20	170	NAC domain-containing protein 19
3swp_B	2e-51	12	164	20	170	NAC domain-containing protein 19
3swp_C	2e-51	12	164	20	170	NAC domain-containing protein 19
3swp_D	2e-51	12	164	20	170	NAC domain-containing protein 19
4dul_A	2e-51	12	164	17	167	NAC domain-containing protein 19
4dul_B	2e-51	12	164	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098911.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098911.1	0.0	protein BEARSKIN1
Swissprot	Q9SV87	1e-122	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2G9G8M7	0.0	A0A2G9G8M7_9LAMI; Uncharacterized protein
STRING	XP_008237820.1	1e-138	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-110	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]