PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011099043.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28954.7 Da PI: 9.99

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.5	7.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gkl++ys+ XP_011099043.1 9 KRIENKISRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLFDYST 59 79***********************************************96 PP
2	K-box	94	2.5e-31	78	172	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +k +++++e+++ e+ kL +++e Lqr+ R++ G+dL+sLs +eL++LeqqLe++lk+iR++Kn+l+ e+i++lq+kek+lq++n+ L k+l+e XP_011099043.1 78 QKVSTDSEQENWCLEYPKLVARVELLQRNMRNYAGQDLDSLSSRELHSLEQQLESALKRIRTRKNQLMNESISQLQRKEKSLQDQNNLLAKQLKE 172 33378999***********************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.6E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.286	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.71E-39	2	78	No hit	No description
SuperFamily	SSF55455	7.06E-32	2	84	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-29	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.5E-27	81	170	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.938	86	176	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLQK KAHEISVLCD AEVALIVFST KGKLFDYSTD 60 SRMERIVERY ERYTYSHQKV STDSEQENWC LEYPKLVARV ELLQRNMRNY AGQDLDSLSS 120 RELHSLEQQL ESALKRIRTR KNQLMNESIS QLQRKEKSLQ DQNNLLAKQL KEKEKQQTLE 180 EQTQQEQEGL PQTQSTFRLP QSPPELHRIP SLAIGAGSQH RTGDEETGSP SRPTSSNTLI 240 PPWLLSHVKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
1tqe_R	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
1tqe_S	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
5f28_A	1e-20	1	78	1	77	MEF2C
5f28_B	1e-20	1	78	1	77	MEF2C
5f28_C	1e-20	1	78	1	77	MEF2C
5f28_D	1e-20	1	78	1	77	MEF2C
6byy_A	1e-20	1	83	1	83	MEF2 CHIMERA
6byy_B	1e-20	1	83	1	83	MEF2 CHIMERA
6byy_C	1e-20	1	83	1	83	MEF2 CHIMERA
6byy_D	1e-20	1	83	1	83	MEF2 CHIMERA
6c9l_A	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
6c9l_B	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
6c9l_C	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
6c9l_D	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
6c9l_E	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
6c9l_F	9e-21	1	83	1	83	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099043.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099043.1	0.0	truncated transcription factor CAULIFLOWER A
Swissprot	D7SMN6	9e-95	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	Q941M9	1e-116	Q941M9_ANTMA; MADS-box transcription factor DEFH28
STRING	Migut.H00589.1.p	1e-106	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	6e-85	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]