PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099077.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 332aa    MW: 36932.1 Da    PI: 5.0137
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.62.8e-092872442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    + C+ +e+ ++ + C+ +   lC+ C + +H+       H +vp+
  XP_011099077.1 28 WLCEACERAPAAFLCKADAASLCAACDSDIHSAnplarrHHRVPI 72
                    68*****************************66899999877775 PP
2CCT69.31e-23263306144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_011099077.1 263 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRK 306
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6652572IPR000315B-box-type zinc finger
SMARTSM003369.8E-142572IPR000315B-box-type zinc finger
CDDcd000214.02E-112872No hitNo description
PfamPF006433.6E-72872IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648263305IPR010402CCT domain
PfamPF062031.5E-17263305IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLKVENSAGN DPGGARYNWL SSRRQPFWLC EACERAPAAF LCKADAASLC AACDSDIHSA  60
NPLARRHHRV PIPQVPNTLY GPSAPGLITG PAAGDAEEEF LTQEADETVD GEDEDEAASW  120
LLLNPVKNGD NQSHDNGPTA ALFGGTMDEY LDLDDYNSCQ NSQFNEHFTN QQQHYSDSVV  180
PTQYQKVKDC FQLGLEYEVS NTAYSYPNSM SHNVSLSPMD VGVVPESTMT EISISHQRPP  240
KGTIDLFSGP PIQVPTQLTP MDREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG  300
RFAKRKDVGV EVEQMFAAPL MGESEYGIVP SF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099077.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099077.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965024e-98COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2I4KKN61e-141A0A2I4KKN6_POPTR; Co-like family protein
TrEMBLA0A3N7G4T31e-141A0A3N7G4T3_POPTR; Uncharacterized protein
STRINGPOPTR_0017s14410.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-76CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]