PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099150.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 505aa    MW: 56968.3 Da    PI: 7.3445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-18145235199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k+l++s+v +  ++ lp +f++ h  +  ++ t++le+e+g+++ +k+i  k++    l++GW++Fv  n+L egD+++F+l+g   f  +v 
  XP_011099150.1 145 FLKALVRSHVASCFWMGLPVPFCKIHLPI--KDATVILENENGEEFPIKYIAHKTG----LSAGWRKFVAGNKLLEGDVLIFQLIGPCVF--KVY 231
                     89*********************777433..5679***************655555....*************************98888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_011099150.1 232 IIRA 235
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-23139236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-19140236IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-24143234No hitNo description
PfamPF023622.3E-15145235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098145236IPR003340B3 DNA binding domain
SMARTSM010191.6E-21145236IPR003340B3 DNA binding domain
PfamPF052661.6E-9378493IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MKLKIVHQNQ ESRGGEEQVM KKEELELEQM EEPQIHVSPE NESTKENSPP PELSPISGSH  60
PMLISGKRRR KPKELIDEIS PVIRRKKRKS SASKSKIGTP DSGGTLMSKG NATISGSTSP  120
VQLKSPTMIR AEEVQLSLGN DHPTFLKALV RSHVASCFWM GLPVPFCKIH LPIKDATVIL  180
ENENGEEFPI KYIAHKTGLS AGWRKFVAGN KLLEGDVLIF QLIGPCVFKV YIIRANDLTE  240
VDGALSLLIL DSQIKQNDAE GTVDAQSKKR RPKSLPLTVV QKKKEKEEPL VPQRGQPEEQ  300
SGNDSDEVAS EVLEGTKFSG SSFHFKDVKS FEEFHIVVNG VCIDSELPEH IRRKYYELCC  360
SKNAFLHDRV LPGLYSKLAA GMIVETINIA DVIRGCKLNT PRKDFEVWEK SLRSFELLGL  420
NVGFLRARLR RLLSLAFDTE GASEVRRYWE TQKEQSRTEE EIQKLEAKLV ELKELSAKYG  480
HEIENLKTKA ESYELKFQEE VDAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16888RRKPKELIDEISPVIRRKKRK
2267272KKRRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A2Z7BZC10.0A0A2Z7BZC1_9LAMI; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-34B3 family protein