PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099170.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 257aa    MW: 29413.6 Da    PI: 8.5916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.9e-201360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llv++v+q+G g+W+ +++  g++R++k+c++rw +yl
   XP_011099170.1 13 KGPWTPEEDKLLVEYVRQHGEGRWSCVSKSSGLNRSGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding50.74e-1667110247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
   XP_011099170.1  67 GHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                      667******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.467860IPR017930Myb domain
SuperFamilySSF466899.17E-3210107IPR009057Homeodomain-like
SMARTSM007172.8E-161262IPR001005SANT/Myb domain
PfamPF002493.1E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231467IPR009057Homeodomain-like
CDDcd001679.89E-121560No hitNo description
PROSITE profilePS5129424.8461115IPR017930Myb domain
SMARTSM007177.7E-1465113IPR001005SANT/Myb domain
PfamPF002494.2E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2468114IPR009057Homeodomain-like
CDDcd001671.52E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MESWGVSEQG WRKGPWTPEE DKLLVEYVRQ HGEGRWSCVS KSSGLNRSGK SCRLRWVNYL  60
RPGLKKGHLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKRKSSRND  120
QEVKRKFHRQ KQHHTLQEND KNDSTKASPD CQLAAEATSD REKSNQEMDV RGNVNDNVEN  180
HHQLLPLMMY QDSSAWFDFI PADNYLWGGL WNLDDQNGCS KMAIQGQANG ADYPRGGGGG  240
GDHAINYIHS GGGGYIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26131147107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099170.10.0myb-related protein 305
TrEMBLA0A2C9WBD79e-90A0A2C9WBD7_MANES; Uncharacterized protein
STRINGcassava4.1_029259m4e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-72myb domain protein 121