PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099179.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 225aa    MW: 25061.7 Da    PI: 8.7289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09144184954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++++P       +Kl+ a++L +Av+Y+k L
  XP_011099179.1 144 ARHRRERISQRIRILQRMVPGG-----TKLDTASMLDEAVHYLKFL 184
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-13136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-11137189No hitNo description
SuperFamilySSF474593.53E-14139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDFNLMMDSS LAHNNAGAGR EMVAQLDKFP QLSDGLYQET SESSDLEFSG GSASSFTTFQ  60
NLYGNAVAPV NAQETKLPLV SQNMELSLNH DPSLSLQQRC SMEGMREMIF RIAVMQPIQI  120
DPESVKPPKR RNVRISKDPQ SVAARHRRER ISQRIRILQR MVPGGTKLDT ASMLDEAVHY  180
LKFLKRQVQS LEQAAAANRP IMGAGLFPVV GSMQMLSSDR TCFLV
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099179.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099179.11e-166transcription factor HEC2
SwissprotQ9SND42e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2G9H2F19e-84A0A2G9H2F1_9LAMI; Uncharacterized protein
STRINGXP_009610959.15e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]