PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099239.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 246aa    MW: 28139.3 Da    PI: 9.8038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.82.9e-161195193
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelv 93
                    ffkvl     ++++ l lp  f++++g     + t  l+++ g++W+vkl  +  +++y +t+GW++Fvk+ +L++g+f+vF ++ g+s+f   
  XP_011099239.1 11 FFKVL--IKDFAQK-LNLPPVFVQKYGRM--LPGTAELRTSFGETWSVKL--EIEDEKYCFTGGWSKFVKDAELEVGEFLVFWFNiGKSTF--D 95
                    78888..5556655.88*********755..6779***************..******************************976444666..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-227104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-238109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8448102IPR003340B3 DNA binding domain
CDDcd100171.31E-18999No hitNo description
PfamPF023622.0E-131194IPR003340B3 DNA binding domain
SMARTSM010191.7E-1411102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-8149237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-8149236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.192150246IPR003340B3 DNA binding domain
SMARTSM010190.027153246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRKPKAKPS FFKVLIKDFA QKLNLPPVFV QKYGRMLPGT AELRTSFGET WSVKLEIEDE  60
KYCFTGGWSK FVKDAELEVG EFLVFWFNIG KSTFDVSVYG INGCEKEISS RNNTLTEDSD  120
AELRNDDANK KQPRTGVCQT EAGGSGITTN PRFEVVLTQS RKLRPSLRKG FAEAACLIGK  180
KAVVLEYPPK DRYWPVLLDS KSLRHFRLDF AAGWLEFRRE NDLRLGKTYS FEFNPTKNVI  240
QVRELK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099239.10.0B3 domain-containing protein At1g49475-like
TrEMBLA0A2G9G1Q81e-69A0A2G9G1Q8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-17B3 family protein