PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099240.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 263aa    MW: 30496 Da    PI: 10.3359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-1711100194
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++++ d +++  l++p  f+++hgg   +   ++l+ +sg++W+vkl  r + ++y++t GW eFv++ +L+  +f+vF+l+g+s+f  +v
  XP_011099240.1  11 FFKIFITDDFTRQ--LRVPPVFVQKHGGCL-TAENVKLRISSGETWDVKLE-RMNNEQYYFTMGWTEFVQDIKLEKLEFLVFRLIGKSTFDVYV 100
                     8999977666654..9**********6553.4458***************4.666678****************************99996655 PP
2B334.92.7e-111742491186
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++++r+++ k+fae+ g++  ++k++ +e + g++W+v l  r + +     l+ GW++F kan+L+ g +  F+++ 
  XP_011099240.1 174 HQLSRVCIRKHFAEAAGLI--GKKKVAVEYPGGQRWNVVLDSRSTLSNfkLDLAVGWSDFRKANKLRFGRTYSFEFIP 249
                     4567899*********999..7789***************44333333567778********************9873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-218102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-208103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-179101No hitNo description
PROSITE profilePS5086311.9429104IPR003340B3 DNA binding domain
PfamPF023623.1E-1511100IPR003340B3 DNA binding domain
SMARTSM010192.9E-1211107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-11159257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-12160251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.066164262IPR003340B3 DNA binding domain
CDDcd100177.34E-7165257No hitNo description
SMARTSM010192.5E-4167262IPR003340B3 DNA binding domain
PfamPF023628.5E-8174249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRKPNCMPS FFKIFITDDF TRQLRVPPVF VQKHGGCLTA ENVKLRISSG ETWDVKLERM  60
NNEQYYFTMG WTEFVQDIKL EKLEFLVFRL IGKSTFDVYV YGILGCERQS FGRTCRVEDS  120
GEFSSGYKCM NRQPSGRKNK RSRTRIMENE GAGTDDESKS NNSNPYFEIV LKRHQLSRVC  180
IRKHFAEAAG LIGKKKVAVE YPGGQRWNVV LDSRSTLSNF KLDLAVGWSD FRKANKLRFG  240
RTYSFEFIPS RNVIEVKQIK RGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099240.10.0B3 domain-containing protein At3g17010-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-12B3 family protein