PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099241.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 259aa    MW: 29720.7 Da    PI: 9.9695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18893495
                    E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     l  s  + +++l+lp +f++++g++   s   +l +esg sW+v++  ++ ++++++t+GW +F+++ +Lk ++f++Fk+dg+s+fe  v 
  XP_011099241.1  8 FL--SADNFTCQLRLPPQFVKDYGEN--FSGNAKLHTESGDSWTVRI--EQIGQQHFFTDGWTKFAQDLDLKFREFLLFKFDGKSTFEVSVY 93
                    44..55556789***********977..6778***************..*********************************9999966654 PP
2B350.34.3e-16144230193
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k+lt+++ +k+    +p++f+   g++  ++++ltl + +g++W v ++  k++gr+ +t+GW+eF   n++ +g ++ F+l+++s+    
  XP_011099241.1 144 FIKKLTKNHESKL---EIPRDFVLGSGIV--RNRKLTLVNAKGKKWPVHVS-AKRGGRFAMTGGWNEFLTGNRVVVGSTISFELVSSSDNIIE 230
                     7899977777665...5******988988..6679***************4.777778*************************9987776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-24398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.774396IPR003340B3 DNA binding domain
CDDcd100171.32E-15493No hitNo description
Gene3DG3DSA:2.40.330.101.1E-22498IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-18596IPR003340B3 DNA binding domain
PfamPF023623.2E-16793IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-17139226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-18139226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.422141237IPR003340B3 DNA binding domain
CDDcd100171.57E-12142222No hitNo description
SMARTSM010195.6E-12144237IPR003340B3 DNA binding domain
PfamPF023621.1E-13144227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMTSFYKFLS ADNFTCQLRL PPQFVKDYGE NFSGNAKLHT ESGDSWTVRI EQIGQQHFFT  60
DGWTKFAQDL DLKFREFLLF KFDGKSTFEV SVYGMSGCQK QLHSCPRTHE QADYDNPRAD  120
DRVLRTRHDE FVSGETDDRQ IWSFIKKLTK NHESKLEIPR DFVLGSGIVR NRKLTLVNAK  180
GKKWPVHVSA KRGGRFAMTG GWNEFLTGNR VVVGSTISFE LVSSSDNIIE AKVLKKETDG  240
ELFSYAKKKR GRPPILRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099241.10.0B3 domain-containing protein REM9
TrEMBLA0A2Z7AT143e-69A0A2Z7AT14_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-21B3 family protein