PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099411.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 576aa    MW: 61540.2 Da    PI: 8.0436
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24207250144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  XP_011099411.1 207 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 250
                     79***************************************998 PP
2QLQ61.62.1e-21141177137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yK+++an+PvP++Ll+++++
  XP_011099411.1 141 GPFTPSQWMELEHQALIYKHIVANVPVPSNLLLPLKR 177
                     59********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.7E-13141177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.485142177IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-15142175IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954207251IPR014977WRC domain
PfamPF088793.8E-21208250IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDFGVVSHKQ TSPKAPSLGS AEPRDEKGHG SVNLKHQRSG LPDDNWRLPK MPRPGEVDFS  60
SKKPTESFAA FGRSNLWPPT LDDGQKMLSF SSSEQLPTDG TGGGSSKSIA FSICPEEQHH  120
ARTGGGGLSG GVSGAFARVR GPFTPSQWME LEHQALIYKH IVANVPVPSN LLLPLKRSLY  180
SYGSPGSYAS NFLGWGPFHL GFSSSNDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR  240
GRHRSRKPVE GHTGHAVSGS TTSKVAPIAS SSSASVISSS STSNSLSAMQ HQFASVQPST  300
ASASTDHLAS RSQGFQGLSL IPPPINLKSK DAPFSIQKPH LPFEESSHSE FGLVSSDSLL  360
NPSERISYMN ANNSGSFLRF DVKEANNQHP VHHFIDDWPK DQGDRSSGPW SEEVKSDWTQ  420
LSMSIPVTQD FSSSSSSPAQ EKSTMSTLRL SHELDPIHMS LGVSHDLGEP LQKQPSWLPV  480
AWGNSMGGPL GEVLTSTTTV AGVGESFSSV KAWKSSPELG SSPTGVLQKT TFVSLSNSSS  540
GSSPPSGDNK KAPENATLCS DLLGSALVSS AAIPSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099411.10.0growth-regulating factor 1
TrEMBLA0A2G9H6880.0A0A2G9H688_9LAMI; Uncharacterized protein
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-101growth-regulating factor 1