PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099465.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27021 Da    PI: 10.253
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ri+n++ rqvtfskRr g+lKKA EL +LCdaev viifsstgklye+ss
  XP_011099465.1  9 ERIDNSTSRQVTFSKRRSGLLKKARELAILCDAEVGVIIFSSTGKLYEFSS 59
                    69***********************************************96 PP
2K-box81.51.9e-27831711199
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++ + +q+e+a L+++++ Lq+++R+l+Ge+L  L++k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + ++++n +L kk++
  XP_011099465.1  83 GSEIKFWQREAATLRQQLQDLQENHRKLMGEELYGLNVKDLQRLENQLEMSLRGVRMKKEQILTAEIQELTRKGNLIHQQNVELYKKVK 171
                     57889*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002658.21E-45278No hitNo description
SuperFamilySSF554553.92E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-2685170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.10386178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIVIER IDNSTSRQVT FSKRRSGLLK KARELAILCD AEVGVIIFSS TGKLYEFSST  60
SMKSIIDRYT KAKEAHHQLL NPGSEIKFWQ REAATLRQQL QDLQENHRKL MGEELYGLNV  120
KDLQRLENQL EMSLRGVRMK KEQILTAEIQ ELTRKGNLIH QQNVELYKKV KYIEQENMEL  180
NRKAYGAKDH IAANTTGFLP FGFTISTQLQ SPIQLQLSPP AVQDMETQTR ANKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22181181MEF2C
5f28_B1e-22181181MEF2C
5f28_C1e-22181181MEF2C
5f28_D1e-22181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099465.11e-174MADS-box transcription factor 23 isoform X1
SwissprotQ9SZJ61e-103AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLP929271e-125P92927_ANTMA; DEFH125 protein
STRINGMigut.H00286.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-100AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]