PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099478.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 354aa    MW: 38481.5 Da    PI: 7.717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.4e-10266309755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  XP_011099478.1 266 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 309
                     5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12261317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-12261313No hitNo description
SuperFamilySSF474592.22E-13263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-12265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7267309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSLANNDRLP NDSTMAIIQA SAFYDHNFGS SGPSLASPKS SREKIYGIGE HSKAVYQEPE  60
SPEKGSGFAK NNFTVSNSSS VSSPSSTNSN GLGYQPNYNL SEEGHSVISF KPEYGNFFHG  120
TGSFLSFDQT KRVPTGNLYP KMMVDENEYP IWEDDLHQSS SFQSQLNPKC TAAASHGLPE  180
TSSSHQASAS YGSGGQFAWL NDHEANTVAD GIQELGRQES GNSSKRPYTG DQSTQALKKQ  240
CIVAPTSASK KQKPKTALPS KDPQSIAAKN RRERISERLK ILQDLVPNGS KVDLVTMLEK  300
AISYVKFLQL QVKVLATDEF WPAQGGKAPD LSQVREAIDA ILASQRDRNS SSKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099478.10.0putative transcription factor bHLH086
TrEMBLA0A2G9HP371e-159A0A2G9HP37_9LAMI; Uncharacterized protein
STRINGMigut.H00272.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-56ROOT HAIR DEFECTIVE6