PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099580.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 519aa    MW: 53885.5 Da    PI: 8.5912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-055274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_011099580.1 52 FVCEICNKGFQRDQNLQLHRRGH 74
                    89*******************88 PP
2zf-C2H211.20.0012128150123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_011099580.1 128 WKCDKCSKKYAVQSDWKAHSKIC 150
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-75174No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
PfamPF121718.3E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035521093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.23E-7123148No hitNo description
SMARTSM00355150128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MNDSTVSGDS SSGNQVAPPK AAKKKRNLPG MPDPDAEVIA LSPKTLLATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWKL RQKSSKDVKK RVYVCPEPSC VHHDPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI THRAFCDALA  180
EESAKTQTLV APTSPDEDKN VEAAASPPQS PPPQASPAPP SRASPAPPPA PPSQAPAPPV  240
PPSTAVLSSV LPVRSPELLE SSSPNPTTTQ IPEETPSVTN LTASCGGSGS SSSSSSNGSS  300
SSNVFASLFA SSTSSGSLHS QTTGFTNLFG AIARPTCTPD VPPSSSSEPV SLCLAMSQGS  360
SIFGTAGQER RQYAPAPQPA MSATALLQKA AQMGAAASNG SLLRGLGIVS SSSSSTGPQE  420
WSQQRLEPDG LSLAAGLGLG LACDGGSGLK ELMLGTPSVF GPKHPTLDLL GLGMAASGGS  480
TDGLSALMTS INGGLDVSAA PPPFGGGEEF GSKDIRRSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35124189368Zinc finger protein JACKDAW
5b3h_F1e-35124189368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099580.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-176IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2G9G9820.0A0A2G9G982_9LAMI; Ovo transcription factor
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]