PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099589.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24936.9 Da    PI: 5.125
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-2058110456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++eq++ Le+ F +++++  e+  +LA++lgL+ rqV vWFqNrRa++k
  XP_011099589.1  58 KRKLSEEQVNMLERSFGSEHKLESERADRLAAELGLDPRQVAVWFQNRRARWK 110
                     45899***********************************************9 PP
2HD-ZIP_I/II1171e-3757148293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE+sF +e+kLe+er  +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+e  +L+e+l+e
  XP_011099589.1  57 RKRKLSEEQVNMLERSFGSEHKLESERADRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHETAVVEKCRLETELLKLKEQLQE 148
                     8****************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.56852112IPR001356Homeobox domain
SMARTSM003894.7E-1855116IPR001356Homeobox domain
SuperFamilySSF466894.71E-1857121IPR009057Homeodomain-like
CDDcd000869.57E-1657113No hitNo description
PfamPF000462.7E-1758110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-2059119IPR009057Homeodomain-like
PRINTSPR000318.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000318.0E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNPEEVDDQM VLISQYYPDG IYSQFVPEQG AAMNSKPRRR RKKNKGDRGG AGDGVMRKRK  60
LSEEQVNMLE RSFGSEHKLE SERADRLAAE LGLDPRQVAV WFQNRRARWK SKKLEEEYSK  120
LKSEHETAVV EKCRLETELL KLKEQLQEAE KEIHRLSERW DGVSSNSPSS SFSIEAMDPP  180
FLGEFGMEGL GNVFYVPEAE ENYAQGLEWN TFYYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14059RKKNKGDRGGAGDGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099589.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.21e-158homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU703e-71ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A2G9G2611e-102A0A2G9G261_9LAMI; Transcription factor HEX
STRINGSolyc02g085630.2.16e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-38homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]