PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099714.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 254aa    MW: 28705.6 Da    PI: 6.0358
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.75.3e-5689184297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyre+ege
  XP_011099714.1  89 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIMTLGFEDYVNPLKLYLTKYREIEGE 183
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_011099714.1 184 K 184
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.1E-5282197IPR009072Histone-fold
SuperFamilySSF471132.17E-3991191IPR009072Histone-fold
PfamPF008084.4E-2894158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-19122140No hitNo description
PROSITE patternPS006850125141IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-19141159No hitNo description
PRINTSPR006152.5E-19160178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKRERDNIDD DDDQRPPVGP NRTTFRISPE STCSNINNDS NHNPPIPPTT TININNNNNN  60
VVSANANANK GTSISNSSNN SNNNNHNNKE QDRFLPIANV GRIMKKVIPG NGKISKDAKE  120
TVQECVSEFI SFVTGEASDK CQREKRKTIN GDDILWAIMT LGFEDYVNPL KLYLTKYREI  180
EGEKLNVPKQ QRVEQRLQHE QSSSVPYNSV YSTTNMMSQP SFVSNDPPFP LPFSQNSIQT  240
TTTLPQQDHV DEHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4489179292Transcription factor HapC (Eurofung)
4g92_B1e-4489179292Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0769783e-58KJ076978.1 Sesamum indicum clone TilSSR_48179 microsatellite Sesame_48179 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099714.10.0nuclear transcription factor Y subunit B-7
TrEMBLA0A2G9HQX51e-113A0A2G9HQX5_9LAMI; CCAAT-binding factor, subunit A (HAP3)
STRINGPGSC0003DMT4000431767e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.16e-64nuclear factor Y, subunit B7