PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011099810.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

BBR-BPC

Protein Properties

Length: 296aa MW: 33153 Da PI: 8.9313

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	313.3	8.2e-96	10	296	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsep 117 m++ aerda+irern+al e+k a+aerdma lqrd+a+aern+a+ erd+++++l ++e s++ ++ g + sg+k i+ +q++ + XP_011099810.1 10 TFMAITAERDAAIRERNMALEERKRAFAERDMAMLQRDAAIAERNAAIQERDEAIASLRFREGSMNdnstIPDSLGNELESGSKRIHYQHQIRAS 104 5799999*****************************************************999976333344566778888999877775555 PP GAGA_bind 118 qledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak......kkkkksekskkkvkkesader............skaekks 193 + e s+ + lr ++++ea ++ +++ + +++k ++ +k k+++ k+ ++++ + + + ++ ++k XP_011099810.1 105 EPEYSPRGsLRGSDITEASETAKSR----RGRQPKDGKVTKPSKSPRVGkrmaegMSKQVNSAPSNGWN------TqqdfesdeedldKQVSWK- 188 5555555444444444444433322....2222222222222222222200011122332222222222......1233444555663555555. PP GAGA_bind 194 idlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288 +l+ln++++Des++PvPvC+CtG+++ CY+WGnGGWqSaCCtttiS+yPLP+++++r +R++grKmS++af+klL++LaaeGyd+s p+DLkdh XP_011099810.1 189 DNLGLNQINFDESAMPVPVCTCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQVANKRYSRVGGRKMSGSAFSKLLNRLAAEGYDFSAPLDLKDH 283 69***************************************************************************************** PP GAGA_bind 289 WAkHGtnkfvtir 301 WAkHGtn++ t++ XP_011099810.1 284 WAKHGTNRYSTLK 296 *******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.3E-104	1	296	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.3E-86	9	296	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDHNHLTIKT FMAITAERDA AIRERNMALE ERKRAFAERD MAMLQRDAAI AERNAAIQER 60 DEAIASLRFR EGSMNDNSTI PDSLGNELES GSKRIHYQHQ IRASEPEYSP RGSLRGSDIT 120 EASETAKSRR GRQPKDGKVT KPSKSPRVGK RMAEGMSKQV NSAPSNGWNT QQDFESDEED 180 LDKQVSWKDN LGLNQINFDE SAMPVPVCTC TGSPQPCYRW GNGGWQSACC TTTISMYPLP 240 QVANKRYSRV GGRKMSGSAF SKLLNRLAAE GYDFSAPLDL KDHWAKHGTN RYSTLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099810.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_011099811.1	0.0	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	3e-86	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2G9GYT6	0.0	A0A2G9GYT6_9LAMI; Uncharacterized protein
STRING	Migut.H01143.1.p	1e-164	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	7e-89	basic pentacysteine 6