PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100018.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 215aa    MW: 23687.7 Da    PI: 9.2674
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.95.1e-331468358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    k rYkeClkNhA+ +GghavDGCgEfmp+ geegt ++l+CaAC+CHRnFHRre+e
  XP_011100018.1 14 KPRYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGTLESLRCAACNCHRNFHRRENE 68
                    679*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-221068IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-311666IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.0E-301667IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.0681766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.98E-19142213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30143214IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26152208IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPSPVEGGAP PLMKPRYKEC LKNHAVGIGG HAVDGCGEFM PAGEEGTLES LRCAACNCHR  60
NFHRRENEGG GGGFVFHQRP HQQQLLLAHH PHGHFGYRSP SGYLHVAPPQ QQQRAAPLAL  120
PSSSGGGGGG AGSGSRDEME DYYSNPSSSG GKKRFRTKFT QEQKDKMLNL AERLDWKIQK  180
QDEELVQQFC SEVGVKRHVL KVWMHNNKHT LGKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231532101875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100018.11e-160zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-69ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-69ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2G9HD451e-117A0A2G9HD45_9LAMI; Uncharacterized protein
STRINGMigut.H02314.1.p7e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-61homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]