PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100134.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 245aa    MW: 28381.8 Da    PI: 7.3809
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19180214135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C + +Tp+WR gp+g+ktLCnaCG++y++ +l
  XP_011100134.1 180 CSHCEAENTPQWRMGPEGPKTLCNACGVRYKSGRL 214
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-13173215No hitNo description
PROSITE profilePS5011412.215174210IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-16174224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-15178212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.96E-13179226No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MYSYICLSCI CLLLLSFQTV VDSSPDYGDL SGVTTTSDGL MFEHHDFCSN DSDEISQLCV  60
PQDRLEDLDL FPDFADDLIL FRFSEQDYNF GEIELEKNPK KDFRDTEMKP FFAKDSSSSD  120
DDVGEVSFSP PDEYSTQHKI NDDRNALRAN LSKKPRSKRP NRLDSLQTKS RNNFTKRRRC  180
SHCEAENTPQ WRMGPEGPKT LCNACGVRYK SGRLVPAASP TFDRMKHSNY HRRIMQKKIT  240
FRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100134.10.0GATA transcription factor 4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-27GATA transcription factor 12