PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100162.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 253aa    MW: 25662.8 Da    PI: 6.7997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.5e-06153173323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk F+++  L  H+r+H
  XP_011100162.1 153 CSVCGKGFPSQKALFGHMRSH 173
                     ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-5151175No hitNo description
PROSITE profilePS5015710.284151173IPR007087Zinc finger, C2H2
SMARTSM003550.001151173IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-10152175IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-4153173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTNGNTGGDH GSPSKPTPNP NPNSPRQEEN PRRRSGGANA PPASPRRRGS PSSPPKTRPV  60
MGVPGESAFA PYTKPRSEPG GSGGRGVEGG PGLQGAQVVP VGSGGYGVVA APGALRIGGS  120
PAARKRVRES GAGSTTAAGG NQPGEGAGNV VNCSVCGKGF PSQKALFGHM RSHPDRGWKG  180
AHPPPTFKAE EEFADLHGLN LPEAGRGGDA QEGAADDHQK EDEAAESEEE EEAGDSGKYR  240
LPDLNNPPPP DAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069476.11e-178uncharacterized protein LOC105155299
RefseqXP_011100162.11e-178uncharacterized protein LOC105178395
RefseqXP_011100164.11e-178uncharacterized protein LOC105178398
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-13C2H2 family protein