PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100220.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 306aa MW: 33403.8 Da PI: 6.8554

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.3e-36	24	139	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas....nsssg.. 88 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l++++ s+a+++ + s s+ ++ ++s++ XP_011100220.1 24 GRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDKLNQLPPSQANHSnhlAPTSGSNDHQlpldQQSETpp 118 89*************************************************************55554444333222222222222212222245 PP TCP 89 .........kaaksaakskks 100 +++ ++++++ XP_011100220.1 119 gyqllannpNSSFMGPPGEPD 139 555555554333333344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-32	24	104	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.064	25	83	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKSTIREGGE ITQVQGGQIL RSIGRKDRHS KVYTSKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKTAI DKLNQLPPSQ ANHSNHLAPT SGSNDHQLPL DQQSETPPGY 120 QLLANNPNSS FMGPPGEPDA HLENTMKSFF PTSSLGSFPG FSSDSVSRAP FQAQDLGLSL 180 HTLHSDNHDH GNAGNPVLPL HETFQRIGGW NSGGDMDGRV GFLMNSQEIS QQALFPQGLP 240 FSHRELLLSN IAAHQAWNQR PFLGSSDEQN PDPSGPPQSS DFGSPSGLGF RVPARIYGEE 300 EPGTRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-22	30	83	1	54	Putative transcription factor PCF6
5zkt_B	7e-22	30	83	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100220.1	0.0	transcription factor TCP10-like
Swissprot	O82277	1e-49	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A067K9Y1	3e-75	A0A067K9Y1_JATCU; Uncharacterized protein
TrEMBL	A0A2Z7D6I7	1e-75	A0A2Z7D6I7_9LAMI; TCP transcription factor 10
STRING	XP_002525139.1	1e-73	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	6e-52	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]