PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100397.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 847aa MW: 96659.1 Da PI: 6.8165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.2e-27	90	192	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA++vGF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +ra +t+Cka+++vk+++dgkw ++++e+ XP_011100397.1 90 FYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSlnrprsrqgsnqdAENATGRRACAKTDCKASMHVKRRSDGKWIIHRFEK 184 9***************************************999999999988776677779************************** PP FAR1 84 eHnHelap 91 eHnHel p XP_011100397.1 185 EHNHELLP 192 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-25	90	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-27	290	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	570	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-4	572	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-8	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MDIDLRLPSG GHDKEVEEEP NGIVNMLDGE EKPLNVDGVG GSMGDVEEKL QIEDAEDVNS 60 PIHDIDFKDV TILEPLPGME FGSHGDAYAF YQEYARSVGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYEKSLNRPR SRQGSNQDAE NATGRRACAK TDCKASMHVK RRSDGKWIIH 180 RFEKEHNHEL LPAQAVSEQT RRMYAAMARQ FAEYKSAVGL KHDSRSHFEK GRNMAMDAGE 240 ANMLLDFFVQ MQSLNSNFFY AVDVGEDQRL KNLLWIDAKS RHDYPNFSDV VSFDTSYVRN 300 KYKMPLALFV GVNQHYQFML LGCALVSDES EATFSWVMQT WLKAMGGQAP KIIITDQDKV 360 MKSVTADAFP STLHFFCLWN IMGKVSETLN HVIKQNENFM SKFEKCVYRS WTDDEFDKRW 420 HKLVNRFGLK ENELMQSLYE DRKKWVPNFM KDGFFAGMST GQRSESVNSF FDKYVHKKTT 480 MQEFIKQYEA ILQDRYEEEA KASSDTWNKQ PSLKSPSPFE KHVAGLYTHA VFRKFQVEVL 540 GAVACIPKRE EQVDATITFK VQDFERNQEF IVTLNELKSE VSCICRLFEF KGFLCRHAMI 600 VLQICGISNI PSQYILKRWT KDAKSRYPMG EGSEQVQSRL QRYNDLCQRA IKLGEEGSFS 660 QESYNLTLRA LDDAFETCLN ANNSCKNLLE AGPSSSPALL CIEEDIQSGN LSKTNKKKSS 720 TKKRKVNMEP DVITVGTPES LQQMEKLNSR PVNLDGFFGA QQGVQGMVQL NLMAPTRDNY 780 YGNQQTIQGL GQLNSIAPTH DGYYGTQPAI HGLGQMDFFR TPSFGYGIRE DPNVRSAQLH 840 DDAPRHA

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MDIDLRLPSG GHDKEVEEEP NGIVNMLDGE EKPLNVDGVG GSMGDVEEKL QIEDAEDVNS  60
PIHDIDFKDV TILEPLPGME FGSHGDAYAF YQEYARSVGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYEKSLNRPR SRQGSNQDAE NATGRRACAK TDCKASMHVK RRSDGKWIIH  180
RFEKEHNHEL LPAQAVSEQT RRMYAAMARQ FAEYKSAVGL KHDSRSHFEK GRNMAMDAGE  240
ANMLLDFFVQ MQSLNSNFFY AVDVGEDQRL KNLLWIDAKS RHDYPNFSDV VSFDTSYVRN  300
KYKMPLALFV GVNQHYQFML LGCALVSDES EATFSWVMQT WLKAMGGQAP KIIITDQDKV  360
MKSVTADAFP STLHFFCLWN IMGKVSETLN HVIKQNENFM SKFEKCVYRS WTDDEFDKRW  420
HKLVNRFGLK ENELMQSLYE DRKKWVPNFM KDGFFAGMST GQRSESVNSF FDKYVHKKTT  480
MQEFIKQYEA ILQDRYEEEA KASSDTWNKQ PSLKSPSPFE KHVAGLYTHA VFRKFQVEVL  540
GAVACIPKRE EQVDATITFK VQDFERNQEF IVTLNELKSE VSCICRLFEF KGFLCRHAMI  600
VLQICGISNI PSQYILKRWT KDAKSRYPMG EGSEQVQSRL QRYNDLCQRA IKLGEEGSFS  660
QESYNLTLRA LDDAFETCLN ANNSCKNLLE AGPSSSPALL CIEEDIQSGN LSKTNKKKSS  720
TKKRKVNMEP DVITVGTPES LQQMEKLNSR PVNLDGFFGA QQGVQGMVQL NLMAPTRDNY  780
YGNQQTIQGL GQLNSIAPTH DGYYGTQPAI HGLGQMDFFR TPSFGYGIRE DPNVRSAQLH  840
DDAPRHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100397.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100397.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2G9GLI3	0.0	A0A2G9GLI3_9LAMI; Uncharacterized protein
STRING	Migut.M00094.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]