PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100403.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 262aa    MW: 29058.8 Da    PI: 7.5812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-1268114354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riN  +++Lr+l+P        K++Ka+ L ++++ +k+L
  XP_011100403.1  68 RNHSEAERRRRERINGHLATLRSLIPGT-----NKMDKAALLAEVINQVKEL 114
                     58*************************6.....5************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.60565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-968114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1468121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1369120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1371120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNKQKKMEFF NTSDGFPANY LGFQELIRNG SSSSSSLVLD NQRGELVRAL VKPGQKVANA  60
EKALIALRNH SEAERRRRER INGHLATLRS LIPGTNKMDK AALLAEVINQ VKELRRSVAE  120
ATDGTLVPTD IDEVTVEQQE DLNDGTAFSI RASLCCDFKH ELLSELREAL EALPLKMIRA  180
EMATLGSRMV NVFVISGRDE GSNVEGREGG QLLVDSVHQA LRSVLDKFYA SEEFSSRNAL  240
SGKRRRVSFF NSSNSSSLGD VW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
2242246KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100403.10.0transcription factor bHLH30-like
TrEMBLA0A1J6I9V81e-111A0A1J6I9V8_NICAT; Transcription factor bhlh30
STRINGPGSC0003DMT4000526221e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-31bHLH family protein