PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100426.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 246aa    MW: 27762.3 Da    PI: 7.0753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l   v+++G ++W++ +   g+ R++k+c++rw +yl
   XP_011100426.1 14 KGAWSEDEDNKLRAHVERYGHPNWRLLPIFAGLARCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.11.8e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E++l++++++qlG++ W++Ia++++ gRt++++k++w+ 
   XP_011100426.1  67 RGNFTKNEEDLIIKLHAQLGNR-WSAIAAKLP-GRTDNEVKNYWHA 110
                      89********************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-21864IPR009057Homeodomain-like
PROSITE profilePS5129416.748961IPR017930Myb domain
SuperFamilySSF466891.05E-2911108IPR009057Homeodomain-like
SMARTSM007171.8E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
CDDcd001679.82E-101661No hitNo description
PROSITE profilePS5129424.95962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2665115IPR009057Homeodomain-like
SMARTSM007178.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567110IPR001005SANT/Myb domain
CDDcd001677.94E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRTPSFDSH GIKKGAWSED EDNKLRAHVE RYGHPNWRLL PIFAGLARCG KSCRLRWMNY  60
LRPGLKRGNF TKNEEDLIIK LHAQLGNRWS AIAAKLPGRT DNEVKNYWHA HIKKRSSKRD  120
RATRKAIKPE TAQELRSSEI NMCTTNTVQE EPASENVPVQ NPKTVVAVDS VEQAEGDLLA  180
ELVNSQLKIN LPPTAEEDLY GLGLCQEMQS NESACCFDSS YAGCAEAQGN FWSEQFGDDA  240
FLVVLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141157107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100426.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100426.10.0myb-related protein 308-like
SwissprotQ6K1S66e-53MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A022QC533e-76A0A022QC53_ERYGU; Uncharacterized protein
STRINGMigut.M00366.1.p1e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.16e-55myb domain protein 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]