PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100438.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 222aa MW: 24842.4 Da PI: 8.7387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	26	75	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 + +E++RR+r++ ++L +llP+ ++ K l +AveYI+s+ XP_011100438.1 26 RKVIEKNRRNRMKGLCSNLISLLPNhT--SKQLKgLPLPYQIDEAVEYIQSM 75 679********************55..477777************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.626	21	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-9	23	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-9	23	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGKPAGWCSS SSTSALGKLT APRIERKVIE KNRRNRMKGL CSNLISLLPN HTSKQLKGLP 60 LPYQIDEAVE YIQSMKMRVE EMRQKKESLF ARNRCDACKN QTTSKSPTLV EVHDMGPNLD 120 VIIANGLNDS TFRDIIRFVH QHGVEVASAS FSRDGNSAVQ ILQDKVGKSK LSFGGQTISR 180 KLKELVCGAS TSEVMVSQLN LWDYEIESDD IWGFEIPQLL QE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100438.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100438.1	1e-166	uncharacterized protein LOC105178626 isoform X1
TrEMBL	A0A2G9HBE7	2e-77	A0A2G9HBE7_9LAMI; Uncharacterized protein
STRING	Migut.M00292.1.p	2e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-17	bHLH family protein