PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100538.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 299aa    MW: 34079.1 Da    PI: 8.5425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1591.8e-49261572128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevls 94 
                      pGfrFhPtdeelv +yL++kv+gk+++l + i+++diyk++PwdLp k++++ekewyfF+kr +ky+++ r+nr  +t sg+Wkatg dk+++s
  XP_011100538.1  26 VPGFRFHPTDEELVGFYLQRKVQGKSITL-DLITQLDIYKYDPWDLP-KMSKGEKEWYFFCKRGRKYRNSARPNRvtVTGSGFWKATGIDKPIHS 118
                     69**************************9.99***************.778899*********************544679************** PP

             NAM  95 kkgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                     +++++     +glkk+Lv+y g+a kg+ktdW+mhe+rl
  XP_011100538.1 119 ASTSNtkcciIGLKKSLVYYGGSAGKGTKTDWMMHEFRL 157
                     8433356777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5320177IPR003441NAC domain
PROSITE profilePS5100552.65325177IPR003441NAC domain
PfamPF023652.1E-2527157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEENYSVAEE GRNNEGSEEA DYSSVVPGFR FHPTDEELVG FYLQRKVQGK SITLDLITQL  60
DIYKYDPWDL PKMSKGEKEW YFFCKRGRKY RNSARPNRVT VTGSGFWKAT GIDKPIHSAS  120
TSNTKCCIIG LKKSLVYYGG SAGKGTKTDW MMHEFRLPPP THHQEAEVWT LCRIVRRNTP  180
QKKRIAQDWK HTINNIKTSK DDANSRTCSF ESAGSNGRCI NIMSSTGENE VIKNNLQELR  240
SHYHNINPVE QISLSQSTVT SSSSSYLWSE NGDHYEILRN GNWYELGSII SGLALDRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-492418316171NO APICAL MERISTEM PROTEIN
1ut4_B4e-492418316171NO APICAL MERISTEM PROTEIN
1ut7_A4e-492418316171NO APICAL MERISTEM PROTEIN
1ut7_B4e-492418316171NO APICAL MERISTEM PROTEIN
3swm_A4e-492418319174NAC domain-containing protein 19
3swm_B4e-492418319174NAC domain-containing protein 19
3swm_C4e-492418319174NAC domain-containing protein 19
3swm_D4e-492418319174NAC domain-containing protein 19
3swp_A4e-492418319174NAC domain-containing protein 19
3swp_B4e-492418319174NAC domain-containing protein 19
3swp_C4e-492418319174NAC domain-containing protein 19
3swp_D4e-492418319174NAC domain-containing protein 19
4dul_A4e-492418316171NAC domain-containing protein 19
4dul_B4e-492418316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100538.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100538.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK558e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2G9HIT01e-110A0A2G9HIT0_9LAMI; Uncharacterized protein
STRINGEOX931113e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-80NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]