PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100744.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 303aa    MW: 34032.8 Da    PI: 6.2452
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.6e-34132190159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers+edp++v++tYeg+H+h+
  XP_011100744.1 132 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERSSEDPSIVVTTYEGTHTHP 190
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35117192IPR003657WRKY domain
SuperFamilySSF1182901.15E-29124192IPR003657WRKY domain
PROSITE profilePS5081131.996127192IPR003657WRKY domain
SMARTSM007745.3E-40132191IPR003657WRKY domain
PfamPF031061.3E-27133190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MLSVQDFNFP SSTFDDFLQN ITSHLIPLEP PQQQLSSHPL PSPPSTLPEY SEVVNTPATP  60
NSSSISSSST EAAPNDDFKK NKTTVEEEEE EEGEEEDNQE KTKKQLKPKK KNQKRQREPR  120
FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP FPRSYYRCTS TACGVKKRVE RSSEDPSIVV  180
TTYEGTHTHP CPITPRGSFG VMPEATTFGG LGGGVGATGV NSSHFVTPHQ MLQYQQQHQQ  240
EPYFQNLSAP LMNLNTATKN PTFPPPFQLE RPFCPSPSSV ARDHGLLQDM LPSKMLKEPK  300
DEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29122192777Probable WRKY transcription factor 4
2lex_A5e-29122192777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100744.20.0probable WRKY transcription factor 48, partial
SwissprotQ9FGZ42e-55WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2G9I0G11e-113A0A2G9I0G1_9LAMI; Uncharacterized protein
STRINGMigut.N00035.1.p9e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-47WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]