PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100790.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

CAMTA

Protein Properties

Length: 927aa MW: 104925 Da PI: 7.2512

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.9	6.6e-52	30	147	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_011100790.1 30 MEEaKARWLRPNEIHAILCNHKYFTVYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 124 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_011100790.1 125 RRCYWLLDKSLEHIVLVHYRETQ 147 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.671	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.5E-77	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.0E-46	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.22E-9	380	465	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.30E-13	564	674	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.1E-15	565	677	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.42E-16	565	677	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.345	573	647	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.1E-6	615	644	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.434	615	647	IPR002110	Ankyrin repeat
Pfam	PF00023	9.2E-5	616	646	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.92E-6	723	829	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	763	789	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	778	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	782	808	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	801	823	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.091	802	826	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.001	803	823	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	35	881	903	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	883	911	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MENTGVRGRF VGSEIHGFRT LEDLDVGNMM EEAKARWLRP NEIHAILCNH KYFTVYVKPV 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN 120 PTFVRRCYWL LDKSLEHIVL VHYRETQEGS PATPVNSNSN SAGSDLSATW PMSEESDSAV 180 DRVYYGSTGS YLECHDSVTV KHHEQRLYEI NTLEWDELLV PDDPHRLITR QQGTTAGFEL 240 QNQYQMNSYR INDDAPSNNK VSPECSTNSF SEPVAGRSSI NYTSPNNMSY QTVEQDTIVN 300 SETMVSGLMP SGGAGSLYNL GKDGLQSQDS FGRWVTHIIA ESPESVDDHT LESSNLAGHQ 360 SSTYPLMDSH DSSPLGPIFT ITDVSPAWAL STEETKILVV GFFNEGQLPY SESKLYLACG 420 DSLLPVDVVQ AGVFRCLIPP QAPKLGNLYI TFDGHKPISQ VLTFEIRAPV QPGTVSFENK 480 TDWEEFQLQM RLAHLLFSSS KGLSIYSTKL SPTALKEAKA FAQKTSHISD GWLHMAKVIE 540 DTKMSFPQAK DKLFELTLQN RLQEWLLEKV VAGCKISERD EQGLGVIHLC SILGYTWAVY 600 PYSWSGLSLD YRDKFGWTAL HWAAYYGREK MVATLLSAGA KPNLVTDPTS QNPGGCSAHD 660 LASKNGYDGL AAYLAEKALV AQFDDMTLAG NVSGSLQTTT NETVNPGNFS EDELYLKDTL 720 AAYRTAADAA ARIQTAFREH SLKIRTKVVE SSNPELEARN IVAAMKIQHA FRNYETRKKI 780 VAAARIQHRF RTWKIRKEFL NMRRQAIKIQ AMFRGFQVRR QYRKIVWSVG VLEKAILRWR 840 LKRKGFRGLQ VQPAETPREP NEESDVEEDF FQASRKQAEE RVEQSVVRVQ AMFRSKQAQE 900 AYRRMKLEHN KAKLEYEGLL HPDLQMG

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MENTGVRGRF VGSEIHGFRT LEDLDVGNMM EEAKARWLRP NEIHAILCNH KYFTVYVKPV  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN  120
PTFVRRCYWL LDKSLEHIVL VHYRETQEGS PATPVNSNSN SAGSDLSATW PMSEESDSAV  180
DRVYYGSTGS YLECHDSVTV KHHEQRLYEI NTLEWDELLV PDDPHRLITR QQGTTAGFEL  240
QNQYQMNSYR INDDAPSNNK VSPECSTNSF SEPVAGRSSI NYTSPNNMSY QTVEQDTIVN  300
SETMVSGLMP SGGAGSLYNL GKDGLQSQDS FGRWVTHIIA ESPESVDDHT LESSNLAGHQ  360
SSTYPLMDSH DSSPLGPIFT ITDVSPAWAL STEETKILVV GFFNEGQLPY SESKLYLACG  420
DSLLPVDVVQ AGVFRCLIPP QAPKLGNLYI TFDGHKPISQ VLTFEIRAPV QPGTVSFENK  480
TDWEEFQLQM RLAHLLFSSS KGLSIYSTKL SPTALKEAKA FAQKTSHISD GWLHMAKVIE  540
DTKMSFPQAK DKLFELTLQN RLQEWLLEKV VAGCKISERD EQGLGVIHLC SILGYTWAVY  600
PYSWSGLSLD YRDKFGWTAL HWAAYYGREK MVATLLSAGA KPNLVTDPTS QNPGGCSAHD  660
LASKNGYDGL AAYLAEKALV AQFDDMTLAG NVSGSLQTTT NETVNPGNFS EDELYLKDTL  720
AAYRTAADAA ARIQTAFREH SLKIRTKVVE SSNPELEARN IVAAMKIQHA FRNYETRKKI  780
VAAARIQHRF RTWKIRKEFL NMRRQAIKIQ AMFRGFQVRR QYRKIVWSVG VLEKAILRWR  840
LKRKGFRGLQ VQPAETPREP NEESDVEEDF FQASRKQAEE RVEQSVVRVQ AMFRSKQAQE  900
AYRRMKLEHN KAKLEYEGLL HPDLQMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100790.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100790.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]