PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100793.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

CAMTA

Protein Properties

Length: 875aa MW: 98969.6 Da PI: 7.2089

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	137.6	3.9e-43	10	93	35	118
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcywlL+++le+ivlvhy+e++ XP_011100793.1 10 TSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 93 79*******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	61.923	1	98	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.5E-48	1	93	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-36	10	91	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.99E-9	328	413	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.19E-13	512	622	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.7E-15	513	625	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.11E-16	513	626	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.345	521	595	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.434	563	595	IPR002110	Ankyrin repeat
SMART	SM00248	5.1E-6	563	592	IPR002110	Ankyrin repeat
Pfam	PF00023	8.6E-5	564	594	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.04E-6	670	777	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	711	737	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	726	748	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	730	756	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	749	771	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.091	750	774	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	9.4E-4	751	771	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	35	829	851	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	831	859	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MRFMPYSVTT SGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY 60 AHGEDNPTFV RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSNSNSA GSDLSATWPM 120 SEESDSAVDR VYYGSTGSYL ECHDSVTVKH HEQRLYEINT LEWDELLVPD DPHRLITRQQ 180 GTTAGFELQN QYQMNSYRIN DDAPSNNKVS PECSTNSFSE PVAGRSSINY TSPNNMSYQT 240 VEQDTIVNSE TMVSGLMPSG GAGSLYNLGK DGLQSQDSFG RWVTHIIAES PESVDDHTLE 300 SSNLAGHQSS TYPLMDSHDS SPLGPIFTIT DVSPAWALST EETKILVVGF FNEGQLPYSE 360 SKLYLACGDS LLPVDVVQAG VFRCLIPPQA PKLGNLYITF DGHKPISQVL TFEIRAPVQP 420 GTVSFENKTD WEEFQLQMRL AHLLFSSSKG LSIYSTKLSP TALKEAKAFA QKTSHISDGW 480 LHMAKVIEDT KMSFPQAKDK LFELTLQNRL QEWLLEKVVA GCKISERDEQ GLGVIHLCSI 540 LGYTWAVYPY SWSGLSLDYR DKFGWTALHW AAYYGREKMV ATLLSAGAKP NLVTDPTSQN 600 PGGCSAHDLA SKNGYDGLAA YLAEKALVAQ FDDMTLAGNV SGSLQTTTNE TVNPGNFSED 660 ELYLKDTLAA YRTAADAAAR IQTAFREHSL KIRTKVVESS NPELEARNIV AAMKIQHAFR 720 NYETRKKIVA AARIQHRFRT WKIRKEFLNM RRQAIKIQAM FRGFQVRRQY RKIVWSVGVL 780 EKAILRWRLK RKGFRGLQVQ PAETPREPNE ESDVEEDFFQ ASRKQAEERV EQSVVRVQAM 840 FRSKQAQEAY RRMKLEHNKA KLEYEGLLHP DLQMG

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MRFMPYSVTT SGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY  60
AHGEDNPTFV RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSNSNSA GSDLSATWPM  120
SEESDSAVDR VYYGSTGSYL ECHDSVTVKH HEQRLYEINT LEWDELLVPD DPHRLITRQQ  180
GTTAGFELQN QYQMNSYRIN DDAPSNNKVS PECSTNSFSE PVAGRSSINY TSPNNMSYQT  240
VEQDTIVNSE TMVSGLMPSG GAGSLYNLGK DGLQSQDSFG RWVTHIIAES PESVDDHTLE  300
SSNLAGHQSS TYPLMDSHDS SPLGPIFTIT DVSPAWALST EETKILVVGF FNEGQLPYSE  360
SKLYLACGDS LLPVDVVQAG VFRCLIPPQA PKLGNLYITF DGHKPISQVL TFEIRAPVQP  420
GTVSFENKTD WEEFQLQMRL AHLLFSSSKG LSIYSTKLSP TALKEAKAFA QKTSHISDGW  480
LHMAKVIEDT KMSFPQAKDK LFELTLQNRL QEWLLEKVVA GCKISERDEQ GLGVIHLCSI  540
LGYTWAVYPY SWSGLSLDYR DKFGWTALHW AAYYGREKMV ATLLSAGAKP NLVTDPTSQN  600
PGGCSAHDLA SKNGYDGLAA YLAEKALVAQ FDDMTLAGNV SGSLQTTTNE TVNPGNFSED  660
ELYLKDTLAA YRTAADAAAR IQTAFREHSL KIRTKVVESS NPELEARNIV AAMKIQHAFR  720
NYETRKKIVA AARIQHRFRT WKIRKEFLNM RRQAIKIQAM FRGFQVRRQY RKIVWSVGVL  780
EKAILRWRLK RKGFRGLQVQ PAETPREPNE ESDVEEDFFQ ASRKQAEERV EQSVVRVQAM  840
FRSKQAQEAY RRMKLEHNKA KLEYEGLLHP DLQMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100793.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100793.1	0.0	calmodulin-binding transcription activator 5 isoform X4
Refseq	XP_011100794.1	0.0	calmodulin-binding transcription activator 5 isoform X4
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]